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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13216 and 13217 are separated by 192 nucleotides
13217 and 13218 are separated by 347 nucleotides
13218 and 13219 are separated by 288 nucleotides
13219 and 13220 are separated by 156 nucleotides
mRNA_4848: 13216 - Hypothetical Protein, at 1,137,464 to 1,141,122
13216
mRNA_4849: 13217 - HMMPfam-FAD binding domain-PF01565,HMMPfam-Berberine and berberine like-PF08031,ProSitePatterns-Oxygen oxidoreductases covalent FAD-binding site.-PS00862,ProSiteProfiles-PCMH-type FAD-binding domain profile.-PS51387,SUPERFAMILY--SSF56176, at 1,141,315 to 1,143,566
13217
mRNA_4850: 13218 - K02309 DBF4 regulatory subunit for Cdc7p protein kinase, at 1,143,914 to 1,146,258
13218
mRNA_4851: 13219 - K06679 MAD1 mitotic spindle assembly checkpoint protein MAD1, at 1,146,547 to 1,149,479
13219
mRNA_4852: 13220 - Hypothetical Protein, at 1,149,636 to 1,152,739
13220
Group
Condition
mRNA
_4848
mRNA
_4849
mRNA
_4850
mRNA
_4851
mRNA
_4852
13216
13217
13218
13219
13220
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
N.D.
-0.7
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.3
N.D.
+0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.5
N.D.
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.0
N.D.
-0.2
-0.3
auxotrophy
Dropout Complete
-0.1
-0.2
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose
+0.1
-0.2
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
N.D.
+0.2
+0.0
growth on oleic acid
YNB Glucose
-0.1
+0.1
N.D.
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
N.D.
-0.1
+0.1
growth on ypd
YPD
+0.1
+0.1
N.D.
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
N.D.
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
N.D.
+0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
N.D.
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.5
N.D.
+1.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
N.D.
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
N.D.
+0.6
-0.1
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