Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 13217 and 13218 are separated by 347 nucleotides13218 and 13219 are separated by 288 nucleotides13219 and 13220 are separated by 156 nucleotides13220 and 13221 are separated by 261 nucleotides mRNA_4849: 13217 - HMMPfam-FAD binding domain-PF01565,HMMPfam-Berberine and berberine like-PF08031,ProSitePatterns-Oxygen oxidoreductases covalent FAD-binding site.-PS00862,ProSiteProfiles-PCMH-type FAD-binding domain profile.-PS51387,SUPERFAMILY--SSF56176, at 1,141,315 to 1,143,566 13217 mRNA_4850: 13218 - K02309 DBF4 regulatory subunit for Cdc7p protein kinase, at 1,143,914 to 1,146,258 13218 mRNA_4851: 13219 - K06679 MAD1 mitotic spindle assembly checkpoint protein MAD1, at 1,146,547 to 1,149,479 13219 mRNA_4852: 13220 - Hypothetical Protein, at 1,149,636 to 1,152,739 13220 mRNA_4853: 13221 - Hypothetical Protein, at 1,153,001 to 1,154,455 13221
Group Condition mRNA_4849 mRNA_4850 mRNA_4851 mRNA_4852 mRNA_4853
13217 13218 13219 13220 13221
facs on lipid accumulation Sorted High BODIPY Gate +0.1 N.D. -0.7 -0.3 -0.9
ypd buoyancy 40 hrs Low Buoyancy -0.3 N.D. +0.0 -0.2 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.0 N.D. -0.2 -0.3 -0.1
auxotrophy YNB Glucose -0.2 N.D. -0.1 -0.1 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.5 N.D. -0.2 +0.1 +0.1
auxotrophy Dropout Complete -0.2 N.D. -0.1 -0.0 -0.0
ypd buoyancy 40 hrs High Buoyancy -0.3 N.D. +0.2 +0.0 -0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.3 N.D. -0.1 -0.1 +0.3
auxotrophy YNB Glucose 75mM Arginine +0.1 N.D. -0.1 +0.1 +0.1
growth on oleic acid YNB Glucose +0.1 N.D. +0.0 -0.1 +0.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.0 N.D. +0.1 +0.0 +0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 N.D. +0.4 -0.3 +0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 N.D. +0.4 -0.1 +0.0
growth on oleic acid YNB Oleic Acid +0.3 N.D. +0.1 -0.0 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 N.D. -0.1 +0.1 +0.4
ypd buoyancy 40 hrs Median Buoyancy -0.2 N.D. +0.3 +0.2 +0.4
growth on ricinoleic acid YNB Glucose +0.3 N.D. +0.1 -0.3 +0.6
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 N.D. +1.0 +0.2 -0.0
growth on ypd YPD +0.1 N.D. -0.3 +0.1 +0.9
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 N.D. +0.1 +0.1 +0.3
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 N.D. +0.6 -0.1 +0.4
remove
mRNA_4849
plot
remove
mRNA_4850
plot
remove
mRNA_4851
remove
mRNA_4852
plot
remove
mRNA_4853
plot