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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13220 and 13221 are separated by 261 nucleotides
13221 and 13222 are separated by 545 nucleotides
13222 and 13223 are separated by 474 nucleotides
13223 and 13224 are separated by 625 nucleotides
mRNA_4852: 13220 - Hypothetical Protein, at 1,149,636 to 1,152,739
13220
mRNA_4853: 13221 - Hypothetical Protein, at 1,153,001 to 1,154,455
13221
mRNA_4854: 13222 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,155,001 to 1,156,417
13222
mRNA_4855: 13223 - K02957 RP-S15Ae, RPS15A small subunit ribosomal protein S15Ae, at 1,156,892 to 1,157,465
13223
mRNA_4856: 13224 - K02962 RP-S17e, RPS17 small subunit ribosomal protein S17e, at 1,158,091 to 1,158,882
13224
Group
Condition
mRNA
_4852
mRNA
_4853
mRNA
_4854
mRNA
_4855
mRNA
_4856
13220
13221
13222
13223
13224
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.9
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.4
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.4
-0.7
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
+0.6
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
+0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.4
N.D.
N.D.
auxotrophy
Dropout Complete
-0.0
-0.0
+0.7
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.0
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
-0.1
+0.9
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
+0.6
N.D.
N.D.
growth on ypd
YPD
+0.1
+0.9
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.4
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
+0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.3
+0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.4
+0.7
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
+0.6
+0.8
N.D.
N.D.
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