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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13225 and 13226 are separated by 453 nucleotides
13226 and 13227 are separated by 1435 nucleotides
13227 and 13228 are separated by 247 nucleotides
13228 and 13229 are separated by 327 nucleotides
mRNA_4857: 13225 - Hypothetical Protein, at 1,159,127 to 1,160,011
13225
mRNA_4858: 13226 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,160,465 to 1,161,653
13226
mRNA_4859: 13227 - Hypothetical Protein, at 1,163,089 to 1,163,880
13227
mRNA_4860: 13228 - K13237 DECR2 peroxisomal 2,4-dienoyl-CoA reductase, at 1,164,128 to 1,165,413
13228
mRNA_4861: 13229 - BLAST NADH-ubiquinone oxidoreductase [Sanghuangporus baumii], at 1,165,741 to 1,167,081
13229
Group
Condition
mRNA
_4857
mRNA
_4858
mRNA
_4859
mRNA
_4860
mRNA
_4861
13225
13226
13227
13228
13229
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.6
+0.1
-0.3
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.5
-0.0
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
-0.4
+0.3
-0.8
auxotrophy
Dropout Complete
+0.2
-0.2
-0.1
-0.1
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.3
+0.1
-0.1
-0.8
auxotrophy
YNB Glucose
+0.1
-0.6
+0.4
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.7
-0.4
-0.1
-1.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
-0.2
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
-0.6
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.3
+0.3
-0.4
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
+0.6
-0.1
-0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.3
-0.0
+0.3
growth on oleic acid
YNB Oleic Acid
-0.0
-0.5
+0.3
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.6
+0.2
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
+0.0
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
+0.1
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.4
-0.3
+0.2
+0.0
growth on ypd
YPD
+0.0
+0.5
+0.1
-0.2
-0.2
growth on oleic acid
YNB Glucose
-0.2
-0.0
+0.1
-0.1
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.9
+0.1
-0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.4
+0.3
+0.4
+0.9
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