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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13229 and 13230 are separated by 112 nucleotides
13230 and 13231 are separated by 217 nucleotides
13231 and 13232 are separated by 146 nucleotides
13232 and 13233 are separated by 824 nucleotides
mRNA_4861: 13229 - BLAST NADH-ubiquinone oxidoreductase [Sanghuangporus baumii], at 1,165,741 to 1,167,081
13229
mRNA_4862: 13230 - K00817 hisC histidinol-phosphate aminotransferase, at 1,167,194 to 1,168,610
13230
mRNA_4863: 13231 - KOG0645 WD40 repeat protein, at 1,168,828 to 1,170,396
13231
mRNA_4864: 13232 - KOG0603 Ribosomal protein S6 kinase, at 1,170,543 to 1,172,403
13232
mRNA_4865: 13233 - K12860 CDC5L, CDC5, CEF1 pre-mRNA-splicing factor CDC5/CEF1, at 1,173,228 to 1,176,152
13233
Group
Condition
mRNA
_4861
mRNA
_4862
mRNA
_4863
mRNA
_4864
mRNA
_4865
13229
13230
13231
13232
13233
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
N.D.
N.D.
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
N.D.
N.D.
-0.2
N.D.
growth on ypd
YPD
-0.2
N.D.
N.D.
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
N.D.
N.D.
+0.5
N.D.
auxotrophy
Dropout Complete
-0.6
N.D.
N.D.
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
N.D.
N.D.
+0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
N.D.
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
N.D.
N.D.
+0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
N.D.
+0.2
N.D.
auxotrophy
YNB Glucose
-0.3
N.D.
N.D.
+0.4
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
N.D.
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
N.D.
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
N.D.
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
N.D.
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
N.D.
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
N.D.
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
N.D.
+0.5
N.D.
growth on oleic acid
YNB Glucose
+0.5
N.D.
N.D.
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
N.D.
+0.6
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
N.D.
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.9
N.D.
N.D.
+0.0
N.D.
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