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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13234 and 13235 are separated by 98 nucleotides
13235 and 13236 are separated by 220 nucleotides
13236 and 13237 are separated by 543 nucleotides
13237 and 13238 are separated by 466 nucleotides
mRNA_4866: 13234 - KOG2881 Predicted membrane protein, at 1,176,473 to 1,177,592
13234
mRNA_4867: 13235 - K06634 CCNH cyclin H, at 1,177,691 to 1,179,183
13235
mRNA_4868: 13236 - HMMPfam-DASH complex subunit Dad1-PF08649, at 1,179,404 to 1,180,039
13236
mRNA_4869: 13237 - K03364 CDH1 cell division cycle 20-like protein 1, cofactor of APC complex, at 1,180,583 to 1,182,754
13237
mRNA_4870: 13238 - KOG2533 Permease of the major facilitator superfamily, at 1,183,221 to 1,185,751
13238
Group
Condition
mRNA
_4866
mRNA
_4867
mRNA
_4868
mRNA
_4869
mRNA
_4870
13234
13235
13236
13237
13238
ypd buoyancy
40 hrs No Buoyancy Separation
-2.5
N.D.
N.D.
-0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
N.D.
-1.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
N.D.
-1.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
N.D.
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
N.D.
N.D.
-0.5
+0.4
growth on ypd
YPD
-0.2
N.D.
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
+1.2
N.D.
N.D.
-0.4
-0.5
growth on oleic acid
YNB Glucose
+0.4
N.D.
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
N.D.
N.D.
-0.4
+0.0
auxotrophy
Dropout Complete
-0.1
N.D.
N.D.
+0.6
+0.1
auxotrophy
YNB Glucose
+0.5
N.D.
N.D.
+0.6
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
N.D.
+0.6
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
N.D.
+0.7
+0.1
growth on oleic acid
YNB Oleic Acid
+1.0
N.D.
N.D.
+0.7
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.5
N.D.
N.D.
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.6
N.D.
N.D.
+0.7
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+2.1
N.D.
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.9
N.D.
N.D.
+0.6
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+2.7
N.D.
N.D.
+0.5
-0.2
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