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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13236 and 13237 are separated by 543 nucleotides
13237 and 13238 are separated by 466 nucleotides
13238 and 13239 are separated by 169 nucleotides
13239 and 13240 are separated by 649 nucleotides
mRNA_4868: 13236 - HMMPfam-DASH complex subunit Dad1-PF08649, at 1,179,404 to 1,180,039
13236
mRNA_4869: 13237 - K03364 CDH1 cell division cycle 20-like protein 1, cofactor of APC complex, at 1,180,583 to 1,182,754
13237
mRNA_4870: 13238 - KOG2533 Permease of the major facilitator superfamily, at 1,183,221 to 1,185,751
13238
mRNA_4871: 13239 - K03777 dld D-lactate dehydrogenase, at 1,185,921 to 1,188,048
13239
mRNA_4872: 13240 - Hypothetical Protein, at 1,188,698 to 1,189,328
13240
Group
Condition
mRNA
_4868
mRNA
_4869
mRNA
_4870
mRNA
_4871
mRNA
_4872
13236
13237
13238
13239
13240
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.3
+0.3
-0.2
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.0
-0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
+0.0
+0.2
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
+0.4
-0.5
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
-0.5
-0.1
+0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
-0.1
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.2
-0.0
+0.6
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.0
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.7
-0.0
+0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
-0.1
+0.1
+0.4
growth on ypd
YPD
N.D.
-0.1
-0.1
+0.2
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.1
-0.1
+0.8
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.7
+0.1
-0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.6
+0.3
-0.0
+0.1
auxotrophy
YNB Glucose
N.D.
+0.6
-0.1
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
+0.2
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.2
+0.3
+1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
-0.2
+0.2
+0.7
growth on oleic acid
YNB Oleic Acid
N.D.
+0.7
+0.0
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.0
+0.6
+0.3
auxotrophy
Dropout Complete
N.D.
+0.6
+0.1
-0.0
+0.7
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