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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13238 and 13239 are separated by 169 nucleotides
13239 and 13240 are separated by 649 nucleotides
13240 and 13241 are separated by 1979 nucleotides
13241 and 13242 are separated by 797 nucleotides
mRNA_4870: 13238 - KOG2533 Permease of the major facilitator superfamily, at 1,183,221 to 1,185,751
13238
mRNA_4871: 13239 - K03777 dld D-lactate dehydrogenase, at 1,185,921 to 1,188,048
13239
mRNA_4872: 13240 - Hypothetical Protein, at 1,188,698 to 1,189,328
13240
mRNA_4873: 13241 - K09205 KLF8_12 krueppel-like factor 8/12, at 1,191,308 to 1,191,654
13241
mRNA_4874: 13242 - KOG2922 Uncharacterized conserved protein, at 1,192,452 to 1,195,364
13242
Group
Condition
mRNA
_4870
mRNA
_4871
mRNA
_4872
mRNA
_4873
mRNA
_4874
13238
13239
13240
13241
13242
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
-0.1
N.D.
-1.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
-0.3
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.2
-0.5
N.D.
-0.2
auxotrophy
YNB Glucose
-0.1
-0.1
+0.6
N.D.
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.3
+1.1
N.D.
-1.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
-0.4
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
+0.4
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.5
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.1
N.D.
+0.4
growth on ypd
YPD
-0.1
+0.2
+0.6
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
-0.8
N.D.
+1.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.0
+0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
+0.5
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.4
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.0
-0.1
+0.3
N.D.
+0.6
auxotrophy
Dropout Complete
+0.1
-0.0
+0.7
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+0.6
N.D.
+0.7
growth on ricinoleic acid
YNB Glucose
-0.5
-0.1
+0.7
N.D.
+1.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.6
+0.3
N.D.
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.8
N.D.
+1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
+0.7
N.D.
+2.0
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