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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13239 and 13240 are separated by 649 nucleotides
13240 and 13241 are separated by 1979 nucleotides
13241 and 13242 are separated by 797 nucleotides
13242 and 13243 are separated by 118 nucleotides
mRNA_4871: 13239 - K03777 dld D-lactate dehydrogenase, at 1,185,921 to 1,188,048
13239
mRNA_4872: 13240 - Hypothetical Protein, at 1,188,698 to 1,189,328
13240
mRNA_4873: 13241 - K09205 KLF8_12 krueppel-like factor 8/12, at 1,191,308 to 1,191,654
13241
mRNA_4874: 13242 - KOG2922 Uncharacterized conserved protein, at 1,192,452 to 1,195,364
13242
mRNA_4875: 13243 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,195,483 to 1,197,426
13243
Group
Condition
mRNA
_4871
mRNA
_4872
mRNA
_4873
mRNA
_4874
mRNA
_4875
13239
13240
13241
13242
13243
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.1
N.D.
-1.5
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.5
N.D.
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.4
N.D.
+0.0
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+1.1
N.D.
-1.5
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
N.D.
-0.4
+0.1
auxotrophy
YNB Glucose
-0.1
+0.6
N.D.
-0.9
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.4
N.D.
-0.3
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.3
N.D.
+0.6
-0.8
growth on oleic acid
YNB Oleic Acid
-0.0
+0.5
N.D.
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.8
N.D.
+1.0
-0.3
auxotrophy
Dropout Complete
-0.0
+0.7
N.D.
-0.0
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.2
N.D.
-0.1
+0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
N.D.
+0.1
+0.4
growth on ypd
YPD
+0.2
+0.6
N.D.
-0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.4
N.D.
+0.2
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.8
N.D.
+1.1
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.3
N.D.
+0.6
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.6
N.D.
+0.7
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.7
N.D.
+1.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.7
N.D.
+2.0
-0.4
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