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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13242 and 13243 are separated by 118 nucleotides
13243 and 13244 are separated by 797 nucleotides
13244 and 13245 are separated by 543 nucleotides
13245 and 13246 are separated by 1307 nucleotides
mRNA_4874: 13242 - KOG2922 Uncharacterized conserved protein, at 1,192,452 to 1,195,364
13242
mRNA_4875: 13243 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,195,483 to 1,197,426
13243
mRNA_4876: 13244 - K20133 USP6NL USP6 N-terminal-like protein, at 1,198,224 to 1,200,676
13244
mRNA_4877: 13245 - KOG2533 Permease of the major facilitator superfamily, at 1,201,220 to 1,203,456
13245
mRNA_4878: 13246 - K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit, at 1,204,764 to 1,207,810
13246
Group
Condition
mRNA
_4874
mRNA
_4875
mRNA
_4876
mRNA
_4877
mRNA
_4878
13242
13243
13244
13245
13246
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
-0.9
-0.2
+1.1
-1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.5
-0.5
+0.1
-0.8
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.1
-0.0
-1.0
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
-0.4
-0.9
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.8
-0.1
-1.2
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.9
-0.2
-0.2
+0.9
growth on ypd
YPD
-0.3
+0.2
+0.3
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
-0.3
-0.6
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
+0.0
-0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.5
+0.0
-0.1
-0.1
growth on oleic acid
YNB Glucose
+0.6
-0.8
-0.4
-0.3
+1.6
auxotrophy
YNB Glucose
-0.9
-0.1
-0.0
-0.4
+2.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
-0.4
-0.2
+2.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.2
+0.3
-0.5
+0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.7
+0.3
-0.0
-0.5
+1.0
growth on oleic acid
YNB Oleic Acid
+0.0
-0.4
+0.0
-0.4
+2.4
auxotrophy
Dropout Complete
-0.0
-0.5
+0.4
-0.1
+2.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
-0.1
-0.3
+1.9
growth on ricinoleic acid
YNB Glucose
+1.4
-0.2
-0.1
+0.1
+2.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.1
-0.5
+0.5
+0.3
+3.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+2.0
-0.4
+0.0
+0.1
+3.4
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