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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13244 and 13245 are separated by 543 nucleotides
13245 and 13246 are separated by 1307 nucleotides
13246 and 13247 are separated by 628 nucleotides
13247 and 13248 are separated by 367 nucleotides
mRNA_4876: 13244 - K20133 USP6NL USP6 N-terminal-like protein, at 1,198,224 to 1,200,676
13244
mRNA_4877: 13245 - KOG2533 Permease of the major facilitator superfamily, at 1,201,220 to 1,203,456
13245
mRNA_4878: 13246 - K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit, at 1,204,764 to 1,207,810
13246
mRNA_4879: 13247 - KOG1259 Nischarin, modulator of integrin alpha5 subunit action, at 1,208,439 to 1,211,006
13247
mRNA_4880: 13248 - K17795 TIM17 mitochondrial import inner membrane translocase subunit TIM17, at 1,211,374 to 1,212,342
13248
Group
Condition
mRNA
_4876
mRNA
_4877
mRNA
_4878
mRNA
_4879
mRNA
_4880
13244
13245
13246
13247
13248
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-1.2
-1.0
+0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-1.0
-0.5
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.9
+0.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.0
+0.0
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.1
-0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.3
-0.2
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+1.1
-1.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.8
+0.8
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.9
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.5
+0.9
-0.1
N.D.
growth on ypd
YPD
+0.3
-0.5
+0.1
+0.8
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.5
+1.0
+0.3
N.D.
growth on oleic acid
YNB Glucose
-0.4
-0.3
+1.6
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.2
+2.0
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
+1.9
+0.1
N.D.
auxotrophy
YNB Glucose
-0.0
-0.4
+2.1
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
-0.4
+2.4
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+2.2
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.1
+3.4
-1.3
N.D.
auxotrophy
Dropout Complete
+0.4
-0.1
+2.1
+0.7
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.3
+3.7
-0.4
N.D.
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