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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13246 and 13247 are separated by 628 nucleotides
13247 and 13248 are separated by 367 nucleotides
13248 and 13249 are separated by 319 nucleotides
13249 and 13250 are separated by 491 nucleotides
mRNA_4878: 13246 - K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit, at 1,204,764 to 1,207,810
13246
mRNA_4879: 13247 - KOG1259 Nischarin, modulator of integrin alpha5 subunit action, at 1,208,439 to 1,211,006
13247
mRNA_4880: 13248 - K17795 TIM17 mitochondrial import inner membrane translocase subunit TIM17, at 1,211,374 to 1,212,342
13248
mRNA_4881: 13249 - K01890 FARSB, pheT phenylalanyl-tRNA synthetase beta chain, at 1,212,662 to 1,215,264
13249
mRNA_4882: 13250 - Hypothetical Protein, at 1,215,756 to 1,216,865
13250
Group
Condition
mRNA
_4878
mRNA
_4879
mRNA
_4880
mRNA
_4881
mRNA
_4882
13246
13247
13248
13249
13250
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.0
N.D.
N.D.
-1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.5
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
+0.5
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.3
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.2
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
N.D.
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.4
N.D.
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
-0.3
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.2
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
-0.1
N.D.
N.D.
+0.2
growth on ypd
YPD
+0.1
+0.8
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+1.0
+0.3
N.D.
N.D.
+0.1
growth on oleic acid
YNB Glucose
+1.6
-0.1
N.D.
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+2.2
-0.2
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+1.9
+0.1
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+2.0
-0.0
N.D.
N.D.
+0.3
auxotrophy
YNB Glucose
+2.1
+0.1
N.D.
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+3.4
-1.3
N.D.
N.D.
+0.5
growth on oleic acid
YNB Oleic Acid
+2.4
-0.0
N.D.
N.D.
+0.3
auxotrophy
Dropout Complete
+2.1
+0.7
N.D.
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+3.7
-0.4
N.D.
N.D.
+0.2
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