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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13250 and 13251 are separated by 301 nucleotides
13251 and 13252 are separated by 481 nucleotides
13252 and 13253 are separated by 280 nucleotides
13253 and 13254 are separated by 249 nucleotides
mRNA_4882: 13250 - Hypothetical Protein, at 1,215,756 to 1,216,865
13250
mRNA_4883: 13251 - HMMPfam-Uncharacterised protein family (UPF0203)-PF05254, at 1,217,167 to 1,217,657
13251
mRNA_4884: 13252 - K07555 ATPeAF1, ATPAF1, ATP11 ATP synthase mitochondrial F1 complex assembly factor 1, at 1,218,139 to 1,219,355
13252
mRNA_4885: 13253 - K03105 SRP19 signal recognition particle subunit SRP19, at 1,219,636 to 1,220,593
13253
mRNA_4886: 13254 - Hypothetical Protein, at 1,220,843 to 1,222,544
13254
Group
Condition
mRNA
_4882
mRNA
_4883
mRNA
_4884
mRNA
_4885
mRNA
_4886
13250
13251
13252
13253
13254
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
N.D.
-2.7
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
-1.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
N.D.
-0.7
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
N.D.
-0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
N.D.
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
N.D.
-0.6
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
N.D.
-0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
N.D.
N.D.
+0.4
+0.5
auxotrophy
Dropout Complete
+0.4
N.D.
N.D.
-0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
N.D.
+0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
N.D.
N.D.
-0.5
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
N.D.
-0.5
+0.5
auxotrophy
YNB Glucose
+0.3
N.D.
N.D.
-0.4
+0.5
growth on ypd
YPD
+0.2
N.D.
N.D.
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
N.D.
N.D.
-0.3
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
N.D.
+0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
N.D.
+0.1
+0.5
growth on oleic acid
YNB Glucose
+0.3
N.D.
N.D.
+0.0
+0.7
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
N.D.
-0.2
+1.0
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