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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13251 and 13252 are separated by 481 nucleotides
13252 and 13253 are separated by 280 nucleotides
13253 and 13254 are separated by 249 nucleotides
13254 and 13255 are separated by 155 nucleotides
mRNA_4883: 13251 - HMMPfam-Uncharacterised protein family (UPF0203)-PF05254, at 1,217,167 to 1,217,657
13251
mRNA_4884: 13252 - K07555 ATPeAF1, ATPAF1, ATP11 ATP synthase mitochondrial F1 complex assembly factor 1, at 1,218,139 to 1,219,355
13252
mRNA_4885: 13253 - K03105 SRP19 signal recognition particle subunit SRP19, at 1,219,636 to 1,220,593
13253
mRNA_4886: 13254 - Hypothetical Protein, at 1,220,843 to 1,222,544
13254
mRNA_4887: 13255 - K11365 SGF73 SAGA-associated factor 73, at 1,222,700 to 1,223,919
13255
Group
Condition
mRNA
_4883
mRNA
_4884
mRNA
_4885
mRNA
_4886
mRNA
_4887
13251
13252
13253
13254
13255
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-2.7
+0.3
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.5
-0.0
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.7
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.6
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-1.2
-0.0
+0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.5
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.4
+0.2
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.3
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+0.1
-0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.6
+0.1
+0.6
auxotrophy
YNB Glucose
N.D.
N.D.
-0.4
+0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.5
+0.5
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.3
+0.1
+0.5
growth on ypd
YPD
N.D.
N.D.
+0.3
+0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.1
+0.5
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.3
-0.3
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.4
+0.5
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.0
+0.7
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.3
+0.5
+0.9
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.2
+1.0
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.4
+0.2
+1.0
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