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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13255 and 13256 are separated by 694 nucleotides
13256 and 13257 are separated by 87 nucleotides
13257 and 13258 are separated by 347 nucleotides
13258 and 13259 are separated by 1217 nucleotides
mRNA_4887: 13255 - K11365 SGF73 SAGA-associated factor 73, at 1,222,700 to 1,223,919
13255
mRNA_4888: 13256 - K20044 PICALM phosphatidylinositol-binding clathrin assembly protein, at 1,224,614 to 1,227,335
13256
mRNA_4889: 13257 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,227,423 to 1,230,111
13257
mRNA_4890: 13258 - HMMPfam-SH3 domain-PF00018,HMMPfam-Cortical protein marker for cell polarity-PF12768,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF69322, at 1,230,459 to 1,234,781
13258
mRNA_4891: 13259 - KOG3140 Predicted membrane protein, at 1,235,999 to 1,237,638
13259
Group
Condition
mRNA
_4887
mRNA
_4888
mRNA
_4889
mRNA
_4890
mRNA
_4891
13255
13256
13257
13258
13259
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.2
-0.6
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.4
+0.1
N.D.
-1.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.6
+0.7
N.D.
-1.1
growth on ypd
YPD
-0.0
-0.3
-0.1
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
-0.7
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
+0.2
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.2
-0.2
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.2
-1.2
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.3
-0.0
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.2
-0.4
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
+0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.0
-0.3
N.D.
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+0.0
-0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
-0.3
N.D.
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
-0.5
-0.2
N.D.
+0.3
growth on oleic acid
YNB Glucose
+0.1
-0.1
+0.0
N.D.
+0.7
auxotrophy
Dropout Complete
+0.6
-0.3
-0.5
N.D.
+0.9
growth on oleic acid
YNB Oleic Acid
+0.6
+0.1
-0.1
N.D.
+0.3
auxotrophy
YNB Glucose
+0.1
-0.3
-0.0
N.D.
+1.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
-0.3
N.D.
+1.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.3
-0.3
N.D.
+1.4
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