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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13261 and 13262 are separated by 172 nucleotides
13262 and 13263 are separated by 361 nucleotides
13263 and 13264 are separated by 3174 nucleotides
13264 and 13265 are separated by 1141 nucleotides
mRNA_4893: 13261 - Hypothetical Protein, at 1,239,240 to 1,240,302
13261
mRNA_4894: 13262 - K11187 PRDX5 peroxiredoxin 5, atypical 2-Cys peroxiredoxin, at 1,240,475 to 1,241,393
13262
mRNA_4895: 13263 - HMMPfam-Etoposide-induced protein 2.4 (EI24)-PF07264, at 1,241,755 to 1,243,025
13263
mRNA_4896: 13264 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1,246,200 to 1,251,399
13264
mRNA_4897: 13265 - K01759 GLO1, gloA lactoylglutathione lyase, at 1,252,541 to 1,253,295
13265
Group
Condition
mRNA
_4893
mRNA
_4894
mRNA
_4895
mRNA
_4896
mRNA
_4897
13261
13262
13263
13264
13265
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.5
+0.2
-1.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
-0.1
-0.0
-1.9
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
+0.0
-0.2
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-1.1
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.1
+0.2
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.0
-0.0
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.4
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.0
+0.2
-0.7
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.2
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
+0.1
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
+0.0
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
-0.2
-0.0
+0.5
growth on ypd
YPD
N.D.
-0.1
+0.2
+0.3
-0.4
auxotrophy
Dropout Complete
N.D.
+0.0
-0.3
-0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.2
-0.3
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.1
-0.3
+0.4
auxotrophy
YNB Glucose
N.D.
-0.1
+0.2
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
+0.2
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.4
+0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
-0.1
+0.2
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.5
-0.0
+0.2
+0.5
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