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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13265 and 13266 are separated by 370 nucleotides
13266 and 13267 are separated by 119 nucleotides
13267 and 13268 are separated by 504 nucleotides
13268 and 13269 are separated by 592 nucleotides
mRNA_4897: 13265 - K01759 GLO1, gloA lactoylglutathione lyase, at 1,252,541 to 1,253,295
13265
mRNA_4898: 13266 - HMMPfam-TAP-like protein-PF08386,SUPERFAMILY--SSF53474, at 1,253,666 to 1,256,190
13266
mRNA_4899: 13267 - KOG4705 Uncharacterized conserved protein, at 1,256,310 to 1,257,849
13267
mRNA_4900: 13268 - HMMPfam-NADH-ubiquinone oxidoreductase B12 subunit family-PF08122, at 1,258,354 to 1,258,880
13268
mRNA_4901: 13269 - K03163 TOP1 DNA topoisomerase I, at 1,259,473 to 1,262,647
13269
Group
Condition
mRNA
_4897
mRNA
_4898
mRNA
_4899
mRNA
_4900
mRNA
_4901
13265
13266
13267
13268
13269
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
+0.2
-1.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
-1.6
N.D.
N.D.
growth on ypd
YPD
-0.4
+0.3
-1.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
+0.2
-0.7
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.8
-0.0
+0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
-0.1
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.2
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
-0.7
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.9
+0.2
+1.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.3
+0.1
-0.9
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.2
-0.6
N.D.
N.D.
auxotrophy
Dropout Complete
+0.4
-0.1
-0.5
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
-0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
-0.3
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.3
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.2
+0.6
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.6
+0.4
+0.3
N.D.
N.D.
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