Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13267 and 13268 are separated by 504 nucleotides13268 and 13269 are separated by 592 nucleotides13269 and 13270 are separated by 439 nucleotides13270 and 13271 are separated by 118 nucleotides mRNA_4899: 13267 - KOG4705 Uncharacterized conserved protein, at 1,256,310 to 1,257,849 13267 mRNA_4900: 13268 - HMMPfam-NADH-ubiquinone oxidoreductase B12 subunit family-PF08122, at 1,258,354 to 1,258,880 13268 mRNA_4901: 13269 - K03163 TOP1 DNA topoisomerase I, at 1,259,473 to 1,262,647 13269 mRNA_4902: 13270 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,263,087 to 1,265,892 13270 mRNA_4903: 13271 - BLAST topoisomerase i [Xanthophyllomyces dendrorhous], at 1,266,011 to 1,266,275 13271
Group Condition mRNA_4899 mRNA_4900 mRNA_4901 mRNA_4902 mRNA_4903
13267 13268 13269 13270 13271
buoyancy on lipid accumulation 40 hrs High Buoyancy -1.6 N.D. N.D. +0.0 N.D.
growth on ypd YPD -1.2 N.D. N.D. +0.1 N.D.
auxotrophy YNB Glucose -0.9 N.D. N.D. -0.1 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -1.0 N.D. N.D. +0.1 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.7 N.D. N.D. -0.1 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.7 N.D. N.D. +0.1 N.D.
growth on oleic acid YNB Glucose -0.6 N.D. N.D. -0.1 N.D.
auxotrophy Dropout Complete -0.5 N.D. N.D. -0.0 N.D.
growth on oleic acid YNB Oleic Acid -0.2 N.D. N.D. -0.2 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.2 N.D. N.D. -0.2 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 N.D. N.D. -0.4 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.1 N.D. N.D. -0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.1 N.D. N.D. -0.2 N.D.
growth on ricinoleic acid YNB Glucose +0.1 N.D. N.D. -0.1 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 N.D. N.D. -0.3 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 N.D. N.D. +0.3 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.0 N.D. N.D. +0.2 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.3 N.D. N.D. -0.1 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.6 N.D. N.D. +0.0 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +1.0 N.D. N.D. -0.3 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.6 N.D. N.D. +0.1 N.D.
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