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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13277 and 13278 are separated by 350 nucleotides
13278 and 13279 are separated by 300 nucleotides
13279 and 13280 are separated by 59 nucleotides
13280 and 13281 are separated by 303 nucleotides
mRNA_4909: 13277 - KOG1339 Aspartyl protease, at 1,281,980 to 1,284,451
13277
mRNA_4910: 13278 - K14555 UTP13, TBL3 U3 small nucleolar RNA-associated protein 13, at 1,284,802 to 1,288,001
13278
mRNA_4911: 13279 - BLAST pre-mrna-splicing factor cwc22 [Moniliophthora ro..., at 1,288,302 to 1,289,594
13279
mRNA_4912: 13280 - KOG3309 Ferredoxin, at 1,289,654 to 1,291,365
13280
mRNA_4913: 13281 - HMMPfam-Spermine/spermidine synthase-PF01564,ProSiteProfiles-Polyamine biosynthesis (PABS) domain profile.-PS51006,SUPERFAMILY--SSF53335, at 1,291,669 to 1,293,879
13281
Group
Condition
mRNA
_4909
mRNA
_4910
mRNA
_4911
mRNA
_4912
mRNA
_4913
13277
13278
13279
13280
13281
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-3.1
+0.1
-0.7
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-3.6
+0.1
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-3.5
+0.6
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-2.6
+0.1
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.2
-2.3
+0.4
-0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-1.4
-0.1
-0.5
+0.1
auxotrophy
YNB Glucose
+0.1
-2.3
+0.0
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-1.0
+0.5
-1.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.7
-0.1
-0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-1.8
+0.5
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-1.6
+0.1
+0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-1.3
-0.4
+1.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-1.3
+0.9
-0.7
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
+0.8
-1.6
+0.5
auxotrophy
Dropout Complete
+0.1
-1.2
+0.1
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.8
+0.7
-0.2
+0.2
growth on ypd
YPD
-0.2
+0.8
+0.7
-1.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.4
+0.0
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
+0.5
-0.4
+0.0
growth on oleic acid
YNB Glucose
+0.1
-0.8
+0.8
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.7
+0.4
-0.1
+0.2
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