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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13278 and 13279 are separated by 300 nucleotides
13279 and 13280 are separated by 59 nucleotides
13280 and 13281 are separated by 303 nucleotides
13281 and 13282 are separated by 790 nucleotides
mRNA_4910: 13278 - K14555 UTP13, TBL3 U3 small nucleolar RNA-associated protein 13, at 1,284,802 to 1,288,001
13278
mRNA_4911: 13279 - BLAST pre-mrna-splicing factor cwc22 [Moniliophthora ro..., at 1,288,302 to 1,289,594
13279
mRNA_4912: 13280 - KOG3309 Ferredoxin, at 1,289,654 to 1,291,365
13280
mRNA_4913: 13281 - HMMPfam-Spermine/spermidine synthase-PF01564,ProSiteProfiles-Polyamine biosynthesis (PABS) domain profile.-PS51006,SUPERFAMILY--SSF53335, at 1,291,669 to 1,293,879
13281
mRNA_4914: 13282 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 1,294,670 to 1,297,098
13282
Group
Condition
mRNA
_4910
mRNA
_4911
mRNA
_4912
mRNA
_4913
mRNA
_4914
13278
13279
13280
13281
13282
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.1
+0.1
-0.7
-0.5
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-3.6
+0.1
-0.2
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-3.5
+0.6
-0.2
-0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.6
+0.1
-0.0
+0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-2.3
+0.4
-0.3
-0.3
+0.1
auxotrophy
YNB Glucose
-2.3
+0.0
+0.4
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
-0.1
-0.5
+0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-1.8
+0.5
+0.1
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
+0.5
-1.3
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-1.6
+0.1
+0.6
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.7
-0.1
-0.4
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-1.3
-0.4
+1.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.8
-1.6
+0.5
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.3
+0.9
-0.7
+0.4
+0.2
auxotrophy
Dropout Complete
-1.2
+0.1
+0.7
-0.1
+0.2
growth on oleic acid
YNB Glucose
-0.8
+0.8
+0.1
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
+0.7
-0.2
+0.2
+0.4
growth on oleic acid
YNB Oleic Acid
+0.2
+0.5
-0.4
+0.0
+0.1
growth on ypd
YPD
+0.8
+0.7
-1.0
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.0
-0.1
-0.2
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.7
+0.4
-0.1
+0.2
+0.2
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