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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13281 and 13282 are separated by 790 nucleotides
13282 and 13283 are separated by 568 nucleotides
13283 and 13284 are separated by 181 nucleotides
13284 and 13285 are separated by 311 nucleotides
mRNA_4913: 13281 - HMMPfam-Spermine/spermidine synthase-PF01564,ProSiteProfiles-Polyamine biosynthesis (PABS) domain profile.-PS51006,SUPERFAMILY--SSF53335, at 1,291,669 to 1,293,879
13281
mRNA_4914: 13282 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 1,294,670 to 1,297,098
13282
mRNA_4915: 13283 - HMMPfam-Complex1_LYR-like-PF13233, at 1,297,667 to 1,298,264
13283
mRNA_4916: 13284 - Hypothetical Protein, at 1,298,446 to 1,299,767
13284
mRNA_4917: 13285 - KOG2920 Predicted methyltransferase, at 1,300,079 to 1,301,093
13285
Group
Condition
mRNA
_4913
mRNA
_4914
mRNA
_4915
mRNA
_4916
mRNA
_4917
13281
13282
13283
13284
13285
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.4
N.D.
-1.4
-1.9
growth on ypd
YPD
-0.2
+0.1
N.D.
+0.1
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.2
N.D.
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.0
N.D.
-0.4
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.4
N.D.
-0.7
+0.1
auxotrophy
YNB Glucose
-0.1
-0.2
N.D.
-0.3
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
N.D.
-0.5
+0.8
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
N.D.
-0.5
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
N.D.
-0.5
+0.8
auxotrophy
Dropout Complete
-0.1
+0.2
N.D.
-0.1
+0.3
growth on oleic acid
YNB Glucose
+0.1
-0.3
N.D.
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.2
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
N.D.
-0.3
+0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.0
N.D.
-0.0
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.0
N.D.
-0.2
+1.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
N.D.
+0.1
+0.8
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.4
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
N.D.
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
N.D.
-0.4
+0.9
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.5
N.D.
+0.5
+0.3
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