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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13284 and 13285 are separated by 311 nucleotides
13285 and 13286 are separated by 156 nucleotides
13286 and 13287 are separated by 371 nucleotides
13287 and 13288 are separated by 749 nucleotides
mRNA_4916: 13284 - Hypothetical Protein, at 1,298,446 to 1,299,767
13284
mRNA_4917: 13285 - KOG2920 Predicted methyltransferase, at 1,300,079 to 1,301,093
13285
mRNA_4918: 13286 - K00327 POR NADPH-ferrihemoprotein reductase, at 1,301,250 to 1,303,860
13286
mRNA_4919: 13287 - K01768 E4.6.1.1 adenylate cyclase, at 1,304,232 to 1,310,691
13287
mRNA_4920: 13288 - K01807 rpiA ribose 5-phosphate isomerase A, at 1,311,441 to 1,312,877
13288
Group
Condition
mRNA
_4916
mRNA
_4917
mRNA
_4918
mRNA
_4919
mRNA
_4920
13284
13285
13286
13287
13288
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
-1.9
N.D.
-0.5
N.D.
growth on ypd
YPD
+0.1
-1.0
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
N.D.
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.9
N.D.
+0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.1
N.D.
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.6
N.D.
+0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
N.D.
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.3
N.D.
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.8
N.D.
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
N.D.
+0.6
N.D.
growth on oleic acid
YNB Oleic Acid
-0.5
+0.4
N.D.
+0.7
N.D.
auxotrophy
YNB Glucose
-0.3
+0.4
N.D.
+0.7
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.5
N.D.
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.9
N.D.
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.4
N.D.
+0.1
N.D.
auxotrophy
Dropout Complete
-0.1
+0.3
N.D.
+0.7
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.8
N.D.
+0.8
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
+0.9
N.D.
+0.7
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.8
N.D.
+0.7
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+1.0
N.D.
+1.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.9
N.D.
+1.2
N.D.
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