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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13285 and 13286 are separated by 156 nucleotides
13286 and 13287 are separated by 371 nucleotides
13287 and 13288 are separated by 749 nucleotides
13288 and 13289 are separated by 507 nucleotides
mRNA_4917: 13285 - KOG2920 Predicted methyltransferase, at 1,300,079 to 1,301,093
13285
mRNA_4918: 13286 - K00327 POR NADPH-ferrihemoprotein reductase, at 1,301,250 to 1,303,860
13286
mRNA_4919: 13287 - K01768 E4.6.1.1 adenylate cyclase, at 1,304,232 to 1,310,691
13287
mRNA_4920: 13288 - K01807 rpiA ribose 5-phosphate isomerase A, at 1,311,441 to 1,312,877
13288
mRNA_4921: 13289 - K12156 CYP83A1 cytochrome P450, family 83, subfamily A, polypeptide 1, at 1,313,385 to 1,315,387
13289
Group
Condition
mRNA
_4917
mRNA
_4918
mRNA
_4919
mRNA
_4920
mRNA
_4921
13285
13286
13287
13288
13289
ypd buoyancy
40 hrs No Buoyancy Separation
-1.9
N.D.
-0.5
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
-0.4
N.D.
-0.7
growth on ypd
YPD
-1.0
N.D.
+0.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
N.D.
+0.7
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
N.D.
+0.4
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
-0.2
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.1
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.4
N.D.
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.6
N.D.
-0.2
auxotrophy
YNB Glucose
+0.4
N.D.
+0.7
N.D.
+0.2
auxotrophy
Dropout Complete
+0.3
N.D.
+0.7
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.5
N.D.
+0.4
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
N.D.
+0.3
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
+0.7
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.8
N.D.
+0.7
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
N.D.
+0.3
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
+0.9
N.D.
+0.7
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.8
N.D.
+0.8
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
N.D.
+1.0
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
N.D.
+1.2
N.D.
+0.5
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