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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13286 and 13287 are separated by 371 nucleotides
13287 and 13288 are separated by 749 nucleotides
13288 and 13289 are separated by 507 nucleotides
13289 and 13290 are separated by 426 nucleotides
mRNA_4918: 13286 - K00327 POR NADPH-ferrihemoprotein reductase, at 1,301,250 to 1,303,860
13286
mRNA_4919: 13287 - K01768 E4.6.1.1 adenylate cyclase, at 1,304,232 to 1,310,691
13287
mRNA_4920: 13288 - K01807 rpiA ribose 5-phosphate isomerase A, at 1,311,441 to 1,312,877
13288
mRNA_4921: 13289 - K12156 CYP83A1 cytochrome P450, family 83, subfamily A, polypeptide 1, at 1,313,385 to 1,315,387
13289
mRNA_4922: 13290 - K18670 YAK1 dual specificity protein kinase YAK1, at 1,315,814 to 1,320,351
13290
Group
Condition
mRNA
_4918
mRNA
_4919
mRNA
_4920
mRNA
_4921
mRNA
_4922
13286
13287
13288
13289
13290
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
N.D.
+0.4
-1.7
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
N.D.
-0.7
+0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
N.D.
+0.2
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
N.D.
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
N.D.
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.6
N.D.
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
N.D.
+0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.7
N.D.
-0.0
-0.2
growth on ypd
YPD
N.D.
+0.1
N.D.
+0.4
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.7
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
N.D.
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.7
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.8
N.D.
-0.0
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.4
N.D.
+0.4
-0.1
auxotrophy
YNB Glucose
N.D.
+0.7
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.7
N.D.
+0.0
+0.1
auxotrophy
Dropout Complete
N.D.
+0.7
N.D.
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.2
N.D.
+0.5
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+1.0
N.D.
+0.2
+0.2
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