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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13289 and 13290 are separated by 426 nucleotides
13290 and 13291 are separated by 346 nucleotides
13291 and 13292 are separated by 124 nucleotides
13292 and 13293 are separated by 286 nucleotides
mRNA_4921: 13289 - K12156 CYP83A1 cytochrome P450, family 83, subfamily A, polypeptide 1, at 1,313,385 to 1,315,387
13289
mRNA_4922: 13290 - K18670 YAK1 dual specificity protein kinase YAK1, at 1,315,814 to 1,320,351
13290
mRNA_4923: 13291 - K03141 TFIIH1, GTF2H1, TFB1 transcription initiation factor TFIIH subunit 1, at 1,320,698 to 1,323,090
13291
mRNA_4924: 13292 - KOG3012 Uncharacterized conserved protein, at 1,323,215 to 1,324,561
13292
mRNA_4925: 13293 - ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 1,324,848 to 1,328,229
13293
Group
Condition
mRNA
_4921
mRNA
_4922
mRNA
_4923
mRNA
_4924
mRNA
_4925
13289
13290
13291
13292
13293
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-1.7
N.D.
-0.6
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.8
N.D.
+0.4
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
N.D.
-0.3
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.4
N.D.
-0.6
-0.7
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
N.D.
-0.6
-0.5
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
N.D.
-0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.2
N.D.
-0.6
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.5
N.D.
-0.1
-0.7
growth on ypd
YPD
+0.4
-0.0
N.D.
-0.3
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
N.D.
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
N.D.
-0.4
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.3
N.D.
-0.3
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.0
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
N.D.
-0.3
+0.5
auxotrophy
YNB Glucose
+0.2
-0.1
N.D.
-0.2
+0.4
growth on oleic acid
YNB Glucose
+0.4
-0.1
N.D.
+0.1
+0.2
auxotrophy
Dropout Complete
+0.2
+0.1
N.D.
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
N.D.
-0.4
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
N.D.
+0.3
+1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.9
N.D.
-0.0
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.2
N.D.
+0.2
+1.3
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mRNA_4922
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mRNA_4923
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mRNA_4925
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