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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13292 and 13293 are separated by 286 nucleotides
13293 and 13294 are separated by 87 nucleotides
13294 and 13295 are separated by 201 nucleotides
13295 and 13296 are separated by 182 nucleotides
mRNA_4924: 13292 - KOG3012 Uncharacterized conserved protein, at 1,323,215 to 1,324,561
13292
mRNA_4925: 13293 - ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 1,324,848 to 1,328,229
13293
mRNA_4926: 13294 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013, at 1,328,317 to 1,334,558
13294
mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1,334,760 to 1,336,928
13295
mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1,337,111 to 1,340,226
13296
Group
Condition
mRNA
_4924
mRNA
_4925
mRNA
_4926
mRNA
_4927
mRNA
_4928
13292
13293
13294
13295
13296
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.7
+0.1
-0.5
-0.5
growth on ricinoleic acid
YNB Glucose
-0.6
-0.5
+0.1
-0.2
-0.5
growth on oleic acid
YNB Oleic Acid
-0.4
-0.3
+0.1
-0.6
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.4
+0.1
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.9
+0.2
+0.4
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.5
+0.6
+0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.7
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+1.0
+0.1
-1.2
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
+0.0
-0.6
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.3
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-1.1
+0.1
+0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
-0.2
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.5
+0.1
+0.2
-0.6
growth on ypd
YPD
-0.3
-0.5
+0.2
+0.6
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.5
+0.3
+0.0
-0.5
auxotrophy
Dropout Complete
-0.1
+0.6
+0.1
+0.4
-1.0
auxotrophy
YNB Glucose
-0.2
+0.4
+0.2
+0.4
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+1.0
-0.2
-0.9
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.5
+0.0
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+1.3
-0.1
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+1.3
-0.0
-0.6
+0.3
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mRNA_4924
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mRNA_4925
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mRNA_4926
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