Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13293 and 13294 are separated by 87 nucleotides13294 and 13295 are separated by 201 nucleotides13295 and 13296 are separated by 182 nucleotides13296 and 13297 are separated by 564 nucleotides mRNA_4925: 13293 - ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 1,324,848 to 1,328,229 13293 mRNA_4926: 13294 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013, at 1,328,317 to 1,334,558 13294 mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1,334,760 to 1,336,928 13295 mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1,337,111 to 1,340,226 13296 mRNA_4929: 13297 - K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit, at 1,340,791 to 1,342,395 13297
Group Condition mRNA_4925 mRNA_4926 mRNA_4927 mRNA_4928 mRNA_4929
13293 13294 13295 13296 13297
growth on ricinoleic acid YNB Ricinoleic Acid -0.7 +0.1 -0.5 -0.5 -3.9
growth on oleic acid YNB Glucose +0.2 +0.0 -0.6 -0.3 -4.4
growth on oleic acid YNB Oleic Acid -0.3 +0.1 -0.6 -0.3 -3.5
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 +0.1 -0.1 -0.2 -3.8
growth on ricinoleic acid YNB Glucose -0.5 +0.1 -0.2 -0.5 -3.1
facs on lipid accumulation Sorted No BODIPY Gate -0.9 +0.2 +0.4 -0.5 -3.2
auxotrophy YNB Glucose 75mM Methionine +0.5 +0.1 +0.2 -0.6 -4.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +1.0 +0.1 -1.2 -0.1 -3.4
auxotrophy YNB Glucose +0.4 +0.2 +0.4 -0.7 -3.8
facs on lipid accumulation Sorted Low BODIPY Gate -1.1 +0.1 +0.4 -0.1 -2.4
facs on lipid accumulation Sorted High BODIPY Gate -0.5 +0.6 +0.2 -0.4 -2.8
buoyancy on lipid accumulation 40 hrs High Buoyancy +1.3 -0.1 -0.5 -0.0 -3.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy +1.0 -0.2 -0.9 +0.4 -2.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +1.3 -0.0 -0.6 +0.3 -2.6
ypd buoyancy 40 hrs No Buoyancy Separation +0.5 +0.0 -0.0 +0.3 -1.4
ypd buoyancy 40 hrs Median Buoyancy -0.2 -0.3 +0.2 -0.1 -0.2
auxotrophy Dropout Complete +0.6 +0.1 +0.4 -1.0 -0.6
ypd buoyancy 40 hrs Low Buoyancy -0.7 -0.1 +0.1 +0.1 +0.2
ypd buoyancy 40 hrs High Buoyancy -0.2 -0.2 +0.1 +0.0 +0.0
growth on ypd YPD -0.5 +0.2 +0.6 -0.2 +0.2
auxotrophy YNB Glucose 75mM Arginine +0.5 +0.3 +0.0 -0.5 +0.2
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