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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13293 and 13294 are separated by 87 nucleotides
13294 and 13295 are separated by 201 nucleotides
13295 and 13296 are separated by 182 nucleotides
13296 and 13297 are separated by 564 nucleotides
mRNA_4925: 13293 - ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 1,324,848 to 1,328,229
13293
mRNA_4926: 13294 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013, at 1,328,317 to 1,334,558
13294
mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1,334,760 to 1,336,928
13295
mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1,337,111 to 1,340,226
13296
mRNA_4929: 13297 - K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit, at 1,340,791 to 1,342,395
13297
Group
Condition
mRNA
_4925
mRNA
_4926
mRNA
_4927
mRNA
_4928
mRNA
_4929
13293
13294
13295
13296
13297
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.1
-0.5
-0.5
-3.9
growth on oleic acid
YNB Glucose
+0.2
+0.0
-0.6
-0.3
-4.4
growth on oleic acid
YNB Oleic Acid
-0.3
+0.1
-0.6
-0.3
-3.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.1
-0.1
-0.2
-3.8
growth on ricinoleic acid
YNB Glucose
-0.5
+0.1
-0.2
-0.5
-3.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
+0.2
+0.4
-0.5
-3.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.1
+0.2
-0.6
-4.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.0
+0.1
-1.2
-0.1
-3.4
auxotrophy
YNB Glucose
+0.4
+0.2
+0.4
-0.7
-3.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
+0.1
+0.4
-0.1
-2.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.6
+0.2
-0.4
-2.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.3
-0.1
-0.5
-0.0
-3.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
-0.2
-0.9
+0.4
-2.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.3
-0.0
-0.6
+0.3
-2.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.0
-0.0
+0.3
-1.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.3
+0.2
-0.1
-0.2
auxotrophy
Dropout Complete
+0.6
+0.1
+0.4
-1.0
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.7
-0.1
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
+0.1
+0.0
+0.0
growth on ypd
YPD
-0.5
+0.2
+0.6
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.3
+0.0
-0.5
+0.2
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