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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13294 and 13295 are separated by 201 nucleotides
13295 and 13296 are separated by 182 nucleotides
13296 and 13297 are separated by 564 nucleotides
13297 and 13298 are separated by 326 nucleotides
mRNA_4926: 13294 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013, at 1,328,317 to 1,334,558
13294
mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1,334,760 to 1,336,928
13295
mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1,337,111 to 1,340,226
13296
mRNA_4929: 13297 - K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit, at 1,340,791 to 1,342,395
13297
mRNA_4930: 13298 - HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491, at 1,342,722 to 1,344,500
13298
Group
Condition
mRNA
_4926
mRNA
_4927
mRNA
_4928
mRNA
_4929
mRNA
_4930
13294
13295
13296
13297
13298
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-1.2
-0.1
-3.4
-0.6
growth on oleic acid
YNB Glucose
+0.0
-0.6
-0.3
-4.4
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
-0.6
-4.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.5
-0.0
-3.3
-0.4
auxotrophy
YNB Glucose
+0.2
+0.4
-0.7
-3.8
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
-0.6
-0.3
-3.5
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
-0.5
-3.9
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
-0.2
-3.8
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.4
-0.5
-3.2
-0.4
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
-0.5
-3.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.2
-0.4
-2.8
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.6
+0.3
-2.6
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.9
+0.4
-2.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
-0.1
-2.4
-0.3
auxotrophy
Dropout Complete
+0.1
+0.4
-1.0
-0.6
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.0
+0.3
-1.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
-0.5
+0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.2
-0.1
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.1
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
+0.0
+0.0
+0.1
growth on ypd
YPD
+0.2
+0.6
-0.2
+0.2
+0.2
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