Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 13295 and 13296 are separated by 182 nucleotides13296 and 13297 are separated by 564 nucleotides13297 and 13298 are separated by 326 nucleotides13298 and 13299 are separated by 333 nucleotides mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1,334,760 to 1,336,928 13295 mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1,337,111 to 1,340,226 13296 mRNA_4929: 13297 - K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit, at 1,340,791 to 1,342,395 13297 mRNA_4930: 13298 - HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491, at 1,342,722 to 1,344,500 13298 mRNA_4931: 13299 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,344,834 to 1,346,285 13299
Group Condition mRNA_4927 mRNA_4928 mRNA_4929 mRNA_4930 mRNA_4931
13295 13296 13297 13298 13299
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -1.2 -0.1 -3.4 -0.6 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.5 -0.0 -3.3 -0.4 -0.2
growth on oleic acid YNB Glucose -0.6 -0.3 -4.4 +0.5 +0.3
growth on oleic acid YNB Oleic Acid -0.6 -0.3 -3.5 -0.0 +0.0
auxotrophy YNB Glucose 75mM Methionine +0.2 -0.6 -4.2 -0.1 +0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.2 -0.4 -2.8 -0.8 -0.4
auxotrophy YNB Glucose +0.4 -0.7 -3.8 -0.4 +0.3
growth on ricinoleic acid YNB Ricinoleic Acid -0.5 -0.5 -3.9 +0.6 +0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.4 -0.5 -3.2 -0.4 +0.0
growth on ricinoleic acid YNB Glucose -0.2 -0.5 -3.1 +0.2 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -0.2 -3.8 +0.2 +0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.6 +0.3 -2.6 -0.3 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.9 +0.4 -2.2 +0.1 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.4 -0.1 -2.4 -0.3 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.0 +0.3 -1.4 -0.1 -0.5
auxotrophy Dropout Complete +0.4 -1.0 -0.6 -0.2 +0.2
auxotrophy YNB Glucose 75mM Arginine +0.0 -0.5 +0.2 -0.4 +0.3
ypd buoyancy 40 hrs Low Buoyancy +0.1 +0.1 +0.2 -0.3 +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.1 -0.2 +0.1 +0.3
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.0 +0.0 +0.1 +0.2
growth on ypd YPD +0.6 -0.2 +0.2 +0.2 +0.4
remove
mRNA_4927
plot
remove
mRNA_4928
plot
remove
mRNA_4929
remove
mRNA_4930
plot
remove
mRNA_4931
plot