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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13296 and 13297 are separated by 564 nucleotides
13297 and 13298 are separated by 326 nucleotides
13298 and 13299 are separated by 333 nucleotides
13299 and 13300 are separated by 499 nucleotides
mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1,337,111 to 1,340,226
13296
mRNA_4929: 13297 - K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit, at 1,340,791 to 1,342,395
13297
mRNA_4930: 13298 - HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491, at 1,342,722 to 1,344,500
13298
mRNA_4931: 13299 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,344,834 to 1,346,285
13299
mRNA_4932: 13300 - K11547 NDC80, HEC1, TID3 kinetochore protein NDC80, at 1,346,785 to 1,349,520
13300
Group
Condition
mRNA
_4928
mRNA
_4929
mRNA
_4930
mRNA
_4931
mRNA
_4932
13296
13297
13298
13299
13300
auxotrophy
YNB Glucose
-0.7
-3.8
-0.4
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-4.2
-0.1
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-2.8
-0.8
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-3.2
-0.4
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-3.4
-0.6
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-3.3
-0.4
-0.2
N.D.
growth on oleic acid
YNB Glucose
-0.3
-4.4
+0.5
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
-3.5
-0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-3.9
+0.6
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-3.8
+0.2
+0.5
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
-3.1
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-2.4
-0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-2.6
-0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-2.2
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-1.4
-0.1
-0.5
N.D.
auxotrophy
Dropout Complete
-1.0
-0.6
-0.2
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.2
-0.4
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
-0.3
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
+0.1
+0.2
N.D.
growth on ypd
YPD
-0.2
+0.2
+0.2
+0.4
N.D.
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