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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13298 and 13299 are separated by 333 nucleotides
13299 and 13300 are separated by 499 nucleotides
13300 and 13301 are separated by 338 nucleotides
13301 and 13302 are separated by 207 nucleotides
mRNA_4930: 13298 - HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491, at 1,342,722 to 1,344,500
13298
mRNA_4931: 13299 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,344,834 to 1,346,285
13299
mRNA_4932: 13300 - K11547 NDC80, HEC1, TID3 kinetochore protein NDC80, at 1,346,785 to 1,349,520
13300
mRNA_4933: 13301 - K14972 PAXIP1, PTIP PAX-interacting protein 1, at 1,349,859 to 1,354,237
13301
mRNA_4934: 13302 - K00611 OTC, argF, argI ornithine carbamoyltransferase, at 1,354,445 to 1,355,871
13302
Group
Condition
mRNA
_4930
mRNA
_4931
mRNA
_4932
mRNA
_4933
mRNA
_4934
13298
13299
13300
13301
13302
auxotrophy
YNB Glucose
-0.4
+0.3
N.D.
+0.1
-4.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.4
N.D.
-0.5
-2.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
N.D.
+0.0
-3.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.2
N.D.
-0.1
-2.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.0
N.D.
-0.4
-1.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.0
N.D.
-0.2
-2.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
N.D.
+0.0
-3.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.1
N.D.
-0.2
-3.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
N.D.
+0.2
-2.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.1
N.D.
-0.2
-2.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
N.D.
+0.1
-2.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.5
N.D.
-0.2
-2.7
growth on oleic acid
YNB Oleic Acid
-0.0
+0.0
N.D.
-0.0
-2.2
growth on oleic acid
YNB Glucose
+0.5
+0.3
N.D.
+0.0
-2.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.5
N.D.
+0.0
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
N.D.
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
N.D.
-0.1
-0.0
auxotrophy
Dropout Complete
-0.2
+0.2
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.3
N.D.
+0.2
+0.3
growth on ypd
YPD
+0.2
+0.4
N.D.
-0.1
+0.1
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