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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13301 and 13302 are separated by 207 nucleotides
13302 and 13303 are separated by 544 nucleotides
13303 and 13304 are separated by 166 nucleotides
13304 and 13305 are separated by 364 nucleotides
mRNA_4933: 13301 - K14972 PAXIP1, PTIP PAX-interacting protein 1, at 1,349,859 to 1,354,237
13301
mRNA_4934: 13302 - K00611 OTC, argF, argI ornithine carbamoyltransferase, at 1,354,445 to 1,355,871
13302
mRNA_4935: 13303 - BLAST salivary gland secretion 1 [Moniliophthora roreri..., at 1,356,416 to 1,359,547
13303
mRNA_4936: 13304 - HMMPfam-MFS_1 like family-PF12832, at 1,359,714 to 1,362,398
13304
mRNA_4937: 13305 - HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249, at 1,362,763 to 1,363,546
13305
Group
Condition
mRNA
_4933
mRNA
_4934
mRNA
_4935
mRNA
_4936
mRNA
_4937
13301
13302
13303
13304
13305
auxotrophy
YNB Glucose
+0.1
-4.3
-0.2
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-3.7
+0.0
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-3.3
+0.2
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-2.7
+0.2
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-3.0
-0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-2.5
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-2.4
-0.3
-0.0
N.D.
growth on oleic acid
YNB Glucose
+0.0
-2.7
-0.2
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-2.6
+0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-1.9
-0.1
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-2.3
+0.2
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-2.2
-0.0
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-2.0
-0.0
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-2.2
+0.3
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.5
-0.4
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
-0.2
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.2
-0.1
N.D.
auxotrophy
Dropout Complete
+0.2
+0.2
-0.2
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.3
-0.2
+0.1
N.D.
growth on ypd
YPD
-0.1
+0.1
-0.0
+0.4
N.D.
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