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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13302 and 13303 are separated by 544 nucleotides
13303 and 13304 are separated by 166 nucleotides
13304 and 13305 are separated by 364 nucleotides
13305 and 13306 are separated by 695 nucleotides
mRNA_4934: 13302 - K00611 OTC, argF, argI ornithine carbamoyltransferase, at 1,354,445 to 1,355,871
13302
mRNA_4935: 13303 - BLAST salivary gland secretion 1 [Moniliophthora roreri..., at 1,356,416 to 1,359,547
13303
mRNA_4936: 13304 - HMMPfam-MFS_1 like family-PF12832, at 1,359,714 to 1,362,398
13304
mRNA_4937: 13305 - HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249, at 1,362,763 to 1,363,546
13305
mRNA_4938: 13306 - HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474, at 1,364,242 to 1,365,196
13306
Group
Condition
mRNA
_4934
mRNA
_4935
mRNA
_4936
mRNA
_4937
mRNA
_4938
13302
13303
13304
13305
13306
auxotrophy
YNB Glucose
-4.3
-0.2
+0.0
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-3.7
+0.0
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-3.0
-0.2
+0.3
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.7
+0.2
-0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.3
+0.2
+0.0
N.D.
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.6
+0.0
-0.2
N.D.
+0.2
growth on oleic acid
YNB Glucose
-2.7
-0.2
+0.3
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
-2.2
-0.0
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.4
-0.3
-0.0
N.D.
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-2.3
+0.2
+0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-2.5
+0.1
-0.1
N.D.
+1.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.4
-0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-2.0
-0.0
+0.0
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.9
-0.1
-0.0
N.D.
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-2.2
+0.3
+0.3
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.2
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
-0.2
N.D.
+0.2
growth on ypd
YPD
+0.1
-0.0
+0.4
N.D.
-0.4
auxotrophy
Dropout Complete
+0.2
-0.2
-0.0
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
-0.1
N.D.
+0.1
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mRNA_4936
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