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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13303 and 13304 are separated by 166 nucleotides
13304 and 13305 are separated by 364 nucleotides
13305 and 13306 are separated by 695 nucleotides
13306 and 13307 are separated by 151 nucleotides
mRNA_4935: 13303 - BLAST salivary gland secretion 1 [Moniliophthora roreri..., at 1,356,416 to 1,359,547
13303
mRNA_4936: 13304 - HMMPfam-MFS_1 like family-PF12832, at 1,359,714 to 1,362,398
13304
mRNA_4937: 13305 - HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249, at 1,362,763 to 1,363,546
13305
mRNA_4938: 13306 - HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474, at 1,364,242 to 1,365,196
13306
mRNA_4939: 13307 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,365,348 to 1,366,647
13307
Group
Condition
mRNA
_4935
mRNA
_4936
mRNA
_4937
mRNA
_4938
mRNA
_4939
13303
13304
13305
13306
13307
growth on ypd
YPD
-0.0
+0.4
N.D.
-0.4
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
N.D.
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.3
N.D.
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
N.D.
+0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.2
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
N.D.
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
N.D.
-0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
+0.0
+0.3
auxotrophy
YNB Glucose
-0.2
+0.0
N.D.
+0.2
-0.0
growth on oleic acid
YNB Glucose
-0.2
+0.3
N.D.
+0.2
-0.3
auxotrophy
Dropout Complete
-0.2
-0.0
N.D.
+0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
N.D.
+0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
N.D.
+0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
N.D.
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.0
N.D.
+0.7
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.0
N.D.
+0.7
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.3
N.D.
+0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
N.D.
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
N.D.
+0.8
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
N.D.
+1.0
-0.1
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