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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13304 and 13305 are separated by 364 nucleotides
13305 and 13306 are separated by 695 nucleotides
13306 and 13307 are separated by 151 nucleotides
13307 and 13308 are separated by 701 nucleotides
mRNA_4936: 13304 - HMMPfam-MFS_1 like family-PF12832, at 1,359,714 to 1,362,398
13304
mRNA_4937: 13305 - HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249, at 1,362,763 to 1,363,546
13305
mRNA_4938: 13306 - HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474, at 1,364,242 to 1,365,196
13306
mRNA_4939: 13307 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,365,348 to 1,366,647
13307
mRNA_4940: 13308 - K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9, at 1,367,349 to 1,367,987
13308
Group
Condition
mRNA
_4936
mRNA
_4937
mRNA
_4938
mRNA
_4939
mRNA
_4940
13304
13305
13306
13307
13308
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
+0.2
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.1
-0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.2
+0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
-0.2
+0.0
+0.2
growth on ypd
YPD
+0.4
N.D.
-0.4
-0.6
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.3
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.0
-0.1
-0.0
growth on oleic acid
YNB Glucose
+0.3
N.D.
+0.2
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
+0.7
-0.0
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
+0.3
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.2
+0.4
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
+0.4
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.0
+0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.1
+0.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.3
-0.0
+0.3
auxotrophy
YNB Glucose
+0.0
N.D.
+0.2
-0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.3
-0.0
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.8
+0.1
+0.0
auxotrophy
Dropout Complete
-0.0
N.D.
+0.3
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
+0.7
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+1.0
-0.1
+0.2
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