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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13305 and 13306 are separated by 695 nucleotides
13306 and 13307 are separated by 151 nucleotides
13307 and 13308 are separated by 701 nucleotides
13308 and 13309 are separated by 426 nucleotides
mRNA_4937: 13305 - HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249, at 1,362,763 to 1,363,546
13305
mRNA_4938: 13306 - HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474, at 1,364,242 to 1,365,196
13306
mRNA_4939: 13307 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,365,348 to 1,366,647
13307
mRNA_4940: 13308 - K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9, at 1,367,349 to 1,367,987
13308
mRNA_4941: 13309 - K12608 CAF16 CCR4-NOT complex subunit CAF16, at 1,368,414 to 1,369,977
13309
Group
Condition
mRNA
_4937
mRNA
_4938
mRNA
_4939
mRNA
_4940
mRNA
_4941
13305
13306
13307
13308
13309
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.3
-0.4
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.3
-0.3
-0.4
growth on ypd
YPD
N.D.
-0.4
-0.6
+0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
-0.2
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.3
-0.3
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.3
-0.3
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
-0.1
-0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-0.0
+0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
+0.0
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+0.1
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.7
-0.0
-0.6
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.3
+0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.4
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.8
+0.1
+0.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.3
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
-0.0
+0.6
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+1.0
-0.1
+0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
+0.2
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.7
+0.1
+0.1
+0.1
auxotrophy
YNB Glucose
N.D.
+0.2
-0.0
+0.4
+0.5
auxotrophy
Dropout Complete
N.D.
+0.3
+0.2
+0.5
+0.2
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