Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13306 and 13307 are separated by 151 nucleotides13307 and 13308 are separated by 701 nucleotides13308 and 13309 are separated by 426 nucleotides13309 and 13310 are separated by 230 nucleotides mRNA_4938: 13306 - HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474, at 1,364,242 to 1,365,196 13306 mRNA_4939: 13307 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,365,348 to 1,366,647 13307 mRNA_4940: 13308 - K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9, at 1,367,349 to 1,367,987 13308 mRNA_4941: 13309 - K12608 CAF16 CCR4-NOT complex subunit CAF16, at 1,368,414 to 1,369,977 13309 mRNA_4942: 13310 - Hypothetical Protein, at 1,370,208 to 1,371,359 13310
Group Condition mRNA_4938 mRNA_4939 mRNA_4940 mRNA_4941 mRNA_4942
13306 13307 13308 13309 13310
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 +0.3 -0.4 -0.6 -0.6
growth on ypd YPD -0.4 -0.6 +0.3 +0.2 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 -0.3 -0.3 -0.4 +0.3
growth on ricinoleic acid YNB Glucose +0.1 -0.3 -0.3 +0.2 -0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.3 -0.2 -0.3 -0.1 -0.2
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.3 +0.3 -0.4 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 +0.0 +0.2 +0.2 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.2 +0.4 +0.0 -0.2 -0.3
growth on oleic acid YNB Glucose +0.2 -0.3 -0.3 +0.2 +0.5
ypd buoyancy 40 hrs Median Buoyancy +0.0 +0.3 +0.3 -0.2 -0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.3 -0.0 +0.3 -0.4 +0.2
growth on oleic acid YNB Oleic Acid -0.0 -0.1 -0.0 +0.2 +0.3
auxotrophy YNB Glucose 75mM Arginine -0.3 +0.1 +0.1 +0.4 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.7 -0.0 -0.6 +0.2 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.4 +0.2 -0.1 +0.2 -0.2
auxotrophy YNB Glucose 75mM Methionine -0.3 -0.0 +0.6 +0.3 +0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +1.0 -0.1 +0.2 -0.4 +0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.8 +0.1 +0.0 -0.4 +0.8
auxotrophy Dropout Complete +0.3 +0.2 +0.5 +0.2 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.7 +0.1 +0.1 +0.1 +0.3
auxotrophy YNB Glucose +0.2 -0.0 +0.4 +0.5 +0.4
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