Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13307 and 13308 are separated by 701 nucleotides13308 and 13309 are separated by 426 nucleotides13309 and 13310 are separated by 230 nucleotides13310 and 13311 are separated by 658 nucleotides mRNA_4939: 13307 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,365,348 to 1,366,647 13307 mRNA_4940: 13308 - K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9, at 1,367,349 to 1,367,987 13308 mRNA_4941: 13309 - K12608 CAF16 CCR4-NOT complex subunit CAF16, at 1,368,414 to 1,369,977 13309 mRNA_4942: 13310 - Hypothetical Protein, at 1,370,208 to 1,371,359 13310 mRNA_4943: 13311 - K13095 SF1 splicing factor 1, at 1,372,018 to 1,374,079 13311
Group Condition mRNA_4939 mRNA_4940 mRNA_4941 mRNA_4942 mRNA_4943
13307 13308 13309 13310 13311
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 -0.4 -0.6 -0.6 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 -0.3 -0.4 +0.3 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.3 -0.1 -0.2 N.D.
growth on ricinoleic acid YNB Glucose -0.3 -0.3 +0.2 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 -0.6 +0.2 +0.2 N.D.
growth on ypd YPD -0.6 +0.3 +0.2 -0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.4 +0.0 -0.2 -0.3 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.3 +0.3 -0.4 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 +0.2 -0.4 +0.3 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.0 +0.3 -0.4 +0.2 N.D.
growth on oleic acid YNB Glucose -0.3 -0.3 +0.2 +0.5 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 -0.1 +0.2 -0.2 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.3 +0.3 -0.2 -0.2 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 +0.2 +0.2 -0.1 N.D.
growth on oleic acid YNB Oleic Acid -0.1 -0.0 +0.2 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 +0.0 -0.4 +0.8 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.1 +0.1 +0.3 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.1 +0.1 +0.4 +0.2 N.D.
auxotrophy Dropout Complete +0.2 +0.5 +0.2 +0.1 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.0 +0.6 +0.3 +0.2 N.D.
auxotrophy YNB Glucose -0.0 +0.4 +0.5 +0.4 N.D.
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