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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13307 and 13308 are separated by 701 nucleotides
13308 and 13309 are separated by 426 nucleotides
13309 and 13310 are separated by 230 nucleotides
13310 and 13311 are separated by 658 nucleotides
mRNA_4939: 13307 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,365,348 to 1,366,647
13307
mRNA_4940: 13308 - K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9, at 1,367,349 to 1,367,987
13308
mRNA_4941: 13309 - K12608 CAF16 CCR4-NOT complex subunit CAF16, at 1,368,414 to 1,369,977
13309
mRNA_4942: 13310 - Hypothetical Protein, at 1,370,208 to 1,371,359
13310
mRNA_4943: 13311 - K13095 SF1 splicing factor 1, at 1,372,018 to 1,374,079
13311
Group
Condition
mRNA
_4939
mRNA
_4940
mRNA
_4941
mRNA
_4942
mRNA
_4943
13307
13308
13309
13310
13311
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.4
-0.6
-0.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
-0.4
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
-0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
+0.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.6
+0.2
+0.2
N.D.
growth on ypd
YPD
-0.6
+0.3
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.0
-0.2
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.3
-0.4
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
-0.4
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.3
-0.4
+0.2
N.D.
growth on oleic acid
YNB Glucose
-0.3
-0.3
+0.2
+0.5
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
+0.2
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.3
-0.2
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.2
+0.2
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
+0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
-0.4
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.1
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
+0.4
+0.2
N.D.
auxotrophy
Dropout Complete
+0.2
+0.5
+0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.6
+0.3
+0.2
N.D.
auxotrophy
YNB Glucose
-0.0
+0.4
+0.5
+0.4
N.D.
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