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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13308 and 13309 are separated by 426 nucleotides
13309 and 13310 are separated by 230 nucleotides
13310 and 13311 are separated by 658 nucleotides
13311 and 13312 are separated by 320 nucleotides
mRNA_4940: 13308 - K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9, at 1,367,349 to 1,367,987
13308
mRNA_4941: 13309 - K12608 CAF16 CCR4-NOT complex subunit CAF16, at 1,368,414 to 1,369,977
13309
mRNA_4942: 13310 - Hypothetical Protein, at 1,370,208 to 1,371,359
13310
mRNA_4943: 13311 - K13095 SF1 splicing factor 1, at 1,372,018 to 1,374,079
13311
mRNA_4944: 13312 - KOG1375 Beta tubulin, at 1,374,400 to 1,376,265
13312
Group
Condition
mRNA
_4940
mRNA
_4941
mRNA
_4942
mRNA
_4943
mRNA
_4944
13308
13309
13310
13311
13312
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.6
-0.6
N.D.
-1.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
-0.2
N.D.
-0.6
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
-0.3
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.4
-0.3
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
-0.3
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.4
+0.2
N.D.
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.4
+0.3
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.2
-0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.2
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.2
+0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
+0.3
N.D.
-0.2
growth on ypd
YPD
+0.3
+0.2
-0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.2
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.3
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
+0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.4
+0.8
N.D.
+0.2
growth on oleic acid
YNB Glucose
-0.3
+0.2
+0.5
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
+0.2
N.D.
+0.2
auxotrophy
Dropout Complete
+0.5
+0.2
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose
+0.4
+0.5
+0.4
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.6
+0.3
+0.2
N.D.
+0.2
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