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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13312 and 13313 are separated by 231 nucleotides
13313 and 13314 are separated by 118 nucleotides
13314 and 13315 are separated by 124 nucleotides
13315 and 13316 are separated by 201 nucleotides
mRNA_4944: 13312 - KOG1375 Beta tubulin, at 1,374,400 to 1,376,265
13312
mRNA_4945: 13313 - Hypothetical Protein, at 1,376,497 to 1,378,672
13313
mRNA_4946: 13314 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,378,791 to 1,380,023
13314
mRNA_4947: 13315 - K12584 DCPS, DCS m7GpppX diphosphatase, at 1,380,148 to 1,381,498
13315
mRNA_4948: 13316 - Hypothetical Protein, at 1,381,700 to 1,382,968
13316
Group
Condition
mRNA
_4944
mRNA
_4945
mRNA
_4946
mRNA
_4947
mRNA
_4948
13312
13313
13314
13315
13316
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.4
-0.4
-0.0
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.4
-0.5
-0.2
-1.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.3
-0.3
-0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.5
-0.0
+0.2
-0.9
growth on ricinoleic acid
YNB Glucose
-0.3
+0.0
-0.4
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.3
+0.2
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
-0.1
+0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
+0.1
+0.1
+0.0
+0.8
growth on ypd
YPD
-0.2
+0.2
+0.1
+0.1
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
+0.2
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.4
+0.1
-0.5
auxotrophy
Dropout Complete
+0.1
-0.2
-0.6
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
+0.3
+0.1
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
-0.3
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
-0.5
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
+0.5
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.1
-0.3
+0.1
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
-0.2
+0.0
+0.5
auxotrophy
YNB Glucose
-0.1
+0.1
-0.0
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
+0.8
+0.2
-0.6
growth on oleic acid
YNB Glucose
+0.4
+0.1
+0.2
+0.3
+0.0
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