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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13317 and 13318 are separated by 750 nucleotides
13318 and 13319 are separated by 169 nucleotides
13319 and 13320 are separated by 277 nucleotides
13320 and 13321 are separated by 190 nucleotides
mRNA_4949: 13317 - Hypothetical Protein, at 1,383,252 to 1,384,313
13317
mRNA_4950: 13318 - K02878 RP-L16, MRPL16, rplP large subunit ribosomal protein L16, at 1,385,064 to 1,386,007
13318
mRNA_4951: 13319 - K15114 ORT1 mitochondrial ornithine carrier protein, at 1,386,177 to 1,387,405
13319
mRNA_4952: 13320 - BLAST Tetratricopeptide-like helical [Xanthophyllomyces den..., at 1,387,683 to 1,389,449
13320
mRNA_4953: 13321 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF01243,SUPERFAMILY--SSF50475, at 1,389,640 to 1,390,956
13321
Group
Condition
mRNA
_4949
mRNA
_4950
mRNA
_4951
mRNA
_4952
mRNA
_4953
13317
13318
13319
13320
13321
auxotrophy
YNB Glucose
-0.2
N.D.
-1.6
+0.2
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.9
-0.2
-0.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.9
+0.1
-0.3
auxotrophy
Dropout Complete
-0.3
N.D.
-0.5
-0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-0.5
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.9
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.8
+0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.3
+0.5
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-0.2
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.3
-0.8
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.7
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.3
-0.0
-0.2
growth on ypd
YPD
+0.3
N.D.
-0.2
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.5
+0.5
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.1
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.3
-0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
+0.0
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.4
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.3
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.3
+0.3
-0.0
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