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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13320 and 13321 are separated by 190 nucleotides
13321 and 13322 are separated by 553 nucleotides
13322 and 13323 are separated by 748 nucleotides
13323 and 13324 are separated by 305 nucleotides
mRNA_4952: 13320 - BLAST Tetratricopeptide-like helical [Xanthophyllomyces den..., at 1,387,683 to 1,389,449
13320
mRNA_4953: 13321 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF01243,SUPERFAMILY--SSF50475, at 1,389,640 to 1,390,956
13321
mRNA_4954: 13322 - Hypothetical Protein, at 1,391,510 to 1,392,423
13322
mRNA_4955: 13323 - K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9, at 1,393,172 to 1,398,147
13323
mRNA_4956: 13324 - HMMPfam-SMI1 / KNR4 family (SUKH-1)-PF09346, at 1,398,453 to 1,400,732
13324
Group
Condition
mRNA
_4952
mRNA
_4953
mRNA
_4954
mRNA
_4955
mRNA
_4956
13320
13321
13322
13323
13324
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.3
-0.2
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.3
-0.1
-0.6
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
-0.1
+0.0
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
-0.0
-0.2
-1.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
-0.1
-0.7
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.1
-0.0
-0.2
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.0
-0.1
-0.6
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
+0.1
-0.8
+0.2
auxotrophy
YNB Glucose
+0.2
-0.4
+0.1
+0.3
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
-0.3
+0.8
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
-0.0
+0.2
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
+0.0
+0.1
-0.1
growth on ypd
YPD
-0.0
-0.0
-0.3
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.4
-0.1
+0.4
-0.4
growth on oleic acid
YNB Glucose
+0.1
-0.3
+0.0
+0.4
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
-0.0
+1.7
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
+0.0
+0.4
-0.5
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
+0.0
+1.2
-0.3
auxotrophy
Dropout Complete
-0.0
-0.3
-0.0
+1.3
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.0
+1.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.0
+2.7
-0.9
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