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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13321 and 13322 are separated by 553 nucleotides
13322 and 13323 are separated by 748 nucleotides
13323 and 13324 are separated by 305 nucleotides
13324 and 13325 are separated by 578 nucleotides
mRNA_4953: 13321 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF01243,SUPERFAMILY--SSF50475, at 1,389,640 to 1,390,956
13321
mRNA_4954: 13322 - Hypothetical Protein, at 1,391,510 to 1,392,423
13322
mRNA_4955: 13323 - K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9, at 1,393,172 to 1,398,147
13323
mRNA_4956: 13324 - HMMPfam-SMI1 / KNR4 family (SUKH-1)-PF09346, at 1,398,453 to 1,400,732
13324
mRNA_4957: 13325 - BLAST Ribonuclease P protein subunit p20 [Hypsizygus marmor..., at 1,401,311 to 1,402,401
13325
Group
Condition
mRNA
_4953
mRNA
_4954
mRNA
_4955
mRNA
_4956
mRNA
_4957
13321
13322
13323
13324
13325
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
-0.6
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
-0.2
-1.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
-0.2
-0.8
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.7
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.0
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.1
-0.6
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
-0.8
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.2
-0.3
-0.3
N.D.
auxotrophy
YNB Glucose
-0.4
+0.1
+0.3
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
+0.4
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.0
+0.2
-0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.0
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
+0.8
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
+0.4
-0.5
N.D.
growth on ypd
YPD
-0.0
-0.3
+0.2
+0.2
N.D.
growth on oleic acid
YNB Glucose
-0.3
+0.0
+0.4
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.0
+1.7
-0.9
N.D.
auxotrophy
Dropout Complete
-0.3
-0.0
+1.3
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.0
+1.2
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
+1.1
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
+2.7
-0.9
N.D.
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