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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13332 and 13333 are separated by 717 nucleotides
13333 and 13334 are separated by 243 nucleotides
13334 and 13335 are separated by 874 nucleotides
13335 and 13336 are separated by 1123 nucleotides
mRNA_4964: 13332 - K08334 BECN1, VPS30, ATG6 beclin 1, at 1,419,421 to 1,420,996
13332
mRNA_4965: 13333 - K15156 MED14, RGR1 mediator of RNA polymerase II transcription subunit 14, at 1,421,714 to 1,425,387
13333
mRNA_4966: 13334 - Hypothetical Protein, at 1,425,631 to 1,426,865
13334
mRNA_4967: 13335 - K11593 ELF2C, AGO eukaryotic translation initiation factor 2C, at 1,427,740 to 1,431,350
13335
mRNA_4968: 13336 - KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion), at 1,432,474 to 1,435,003
13336
Group
Condition
mRNA
_4964
mRNA
_4965
mRNA
_4966
mRNA
_4967
mRNA
_4968
13332
13333
13334
13335
13336
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
-0.2
-0.7
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
-0.6
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.3
-0.0
+0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.1
-0.6
+0.2
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.6
-0.5
+0.0
+0.9
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.6
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+1.0
-0.6
+0.0
-0.2
+0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.2
-0.5
+0.0
+1.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.5
-0.2
-0.0
+1.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.4
+0.7
+0.2
+0.0
auxotrophy
YNB Glucose
+0.2
+0.1
+0.2
+0.1
+1.3
auxotrophy
Dropout Complete
+0.4
+0.7
-0.4
+0.2
+1.2
growth on ypd
YPD
+0.7
+0.2
+1.0
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
+0.3
+0.1
+1.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.0
+0.9
+0.5
+1.3
growth on oleic acid
YNB Glucose
+0.2
+0.2
+0.5
+0.1
+1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.6
+0.4
+0.2
+1.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.6
+3.1
-0.0
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
+3.0
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.5
+3.6
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.9
+2.7
+0.1
+0.4
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