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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13336 and 13337 are separated by 81 nucleotides
13337 and 13338 are separated by 426 nucleotides
13338 and 13339 are separated by 5745 nucleotides
13339 and 13340 are separated by 914 nucleotides
mRNA_4968: 13336 - KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion), at 1,432,474 to 1,435,003
13336
mRNA_4969: 13337 - K20456 OSBP oxysterol-binding protein 1, at 1,435,085 to 1,439,408
13337
mRNA_4970: 13338 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 1,439,835 to 1,441,343
13338
mRNA_4971: 13339 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,447,089 to 1,449,047
13339
mRNA_4972: 13340 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 1,449,962 to 1,451,515
13340
Group
Condition
mRNA
_4968
mRNA
_4969
mRNA
_4970
mRNA
_4971
mRNA
_4972
13336
13337
13338
13339
13340
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.3
-0.0
-1.1
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.9
+0.0
+0.1
-0.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
-0.0
-0.4
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.1
-0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
+0.0
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.0
+0.0
-0.1
auxotrophy
Dropout Complete
+1.2
+0.2
-0.1
-0.8
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.1
-0.1
+0.0
-0.0
growth on ypd
YPD
+0.2
+0.4
-0.1
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.0
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+1.1
+0.1
-0.0
-0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.1
+0.2
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+1.3
+0.3
-0.0
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.9
+0.3
+0.2
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.0
-0.0
+0.6
+0.1
growth on oleic acid
YNB Oleic Acid
+0.8
+0.3
+0.1
+0.1
-0.2
growth on oleic acid
YNB Glucose
+1.4
+0.1
+0.2
-0.1
-0.4
auxotrophy
YNB Glucose
+1.3
+0.3
+0.1
-0.4
-0.0
growth on ricinoleic acid
YNB Glucose
+1.2
-0.1
+0.1
+0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.7
+0.2
-0.1
+0.6
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.8
+0.2
-0.2
+0.4
-0.1
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