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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13338 and 13339 are separated by 5745 nucleotides
13339 and 13340 are separated by 914 nucleotides
13340 and 13341 are separated by 388 nucleotides
13341 and 13342 are separated by 346 nucleotides
mRNA_4970: 13338 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 1,439,835 to 1,441,343
13338
mRNA_4971: 13339 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,447,089 to 1,449,047
13339
mRNA_4972: 13340 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 1,449,962 to 1,451,515
13340
mRNA_4973: 13341 - K18466 VPS26 vacuolar protein sorting-associated protein 26, at 1,451,904 to 1,453,549
13341
mRNA_4974: 13342 - Hypothetical Protein, at 1,453,896 to 1,454,599
13342
Group
Condition
mRNA
_4970
mRNA
_4971
mRNA
_4972
mRNA
_4973
mRNA
_4974
13338
13339
13340
13341
13342
auxotrophy
Dropout Complete
-0.1
-0.8
-0.2
-2.6
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.4
-0.1
-2.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.4
-0.4
-2.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.4
-0.0
-2.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.6
+0.2
-1.9
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
-0.2
-1.8
-0.3
auxotrophy
YNB Glucose
+0.1
-0.4
-0.0
-1.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.5
-0.1
-1.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-1.1
-0.8
+0.3
+0.0
growth on ypd
YPD
-0.1
-0.0
-0.0
-1.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.4
+0.3
-1.4
-0.1
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.4
-0.7
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.4
-0.1
-1.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.6
-0.3
-1.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.0
+0.3
-1.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.1
-1.0
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
-0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.6
+0.1
-0.7
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.0
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.0
+0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
-0.1
+0.6
-0.0
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