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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13343 and 13344 are separated by 1447 nucleotides
13344 and 13345 are separated by 1010 nucleotides
13345 and 13346 are separated by 883 nucleotides
13346 and 13347 are separated by 113 nucleotides
mRNA_4975: 13343 - Hypothetical Protein, at 1,454,950 to 1,456,101
13343
mRNA_4976: 13344 - Hypothetical Protein, at 1,457,549 to 1,458,145
13344
mRNA_4977: 13345 - Hypothetical Protein, at 1,459,156 to 1,464,394
13345
mRNA_4978: 13346 - K12883 NCBP2, CBP20 nuclear cap-binding protein subunit 2, at 1,465,278 to 1,466,176
13346
mRNA_4979: 13347 - K03575 mutY A/G-specific adenine glycosylase, at 1,466,290 to 1,468,594
13347
Group
Condition
mRNA
_4975
mRNA
_4976
mRNA
_4977
mRNA
_4978
mRNA
_4979
13343
13344
13345
13346
13347
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.1
-0.5
-1.0
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.3
-0.1
-1.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.1
+0.0
-1.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.2
-0.2
-0.7
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
+0.1
-0.3
-0.3
auxotrophy
Dropout Complete
-0.4
+0.0
+0.1
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.2
-0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.1
+0.2
-0.3
growth on ypd
YPD
+0.1
+0.0
-0.0
+0.0
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.0
+0.0
-0.8
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.0
+0.1
-0.6
-0.1
auxotrophy
YNB Glucose
-0.1
-0.0
+0.2
+0.0
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
-0.0
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.2
+0.0
-0.5
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.0
-0.2
-0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.2
+0.3
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.0
+0.4
+0.0
-0.0
growth on oleic acid
YNB Glucose
+0.3
+0.2
+0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
+0.3
+0.3
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.3
+0.1
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
-0.0
+1.2
+0.3
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