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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13344 and 13345 are separated by 1010 nucleotides
13345 and 13346 are separated by 883 nucleotides
13346 and 13347 are separated by 113 nucleotides
13347 and 13348 are separated by 428 nucleotides
mRNA_4976: 13344 - Hypothetical Protein, at 1,457,549 to 1,458,145
13344
mRNA_4977: 13345 - Hypothetical Protein, at 1,459,156 to 1,464,394
13345
mRNA_4978: 13346 - K12883 NCBP2, CBP20 nuclear cap-binding protein subunit 2, at 1,465,278 to 1,466,176
13346
mRNA_4979: 13347 - K03575 mutY A/G-specific adenine glycosylase, at 1,466,290 to 1,468,594
13347
mRNA_4980: 13348 - K07432 ALG13 beta-1,4-N-acetylglucosaminyltransferase, at 1,469,023 to 1,469,757
13348
Group
Condition
mRNA
_4976
mRNA
_4977
mRNA
_4978
mRNA
_4979
mRNA
_4980
13344
13345
13346
13347
13348
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.5
-1.0
-0.9
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
-1.3
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.0
-1.4
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
-0.7
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
-0.8
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
-0.6
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.3
-0.3
N.D.
growth on ypd
YPD
+0.0
-0.0
+0.0
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.0
-0.5
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
+0.2
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
-0.0
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
-0.2
-0.3
N.D.
auxotrophy
Dropout Complete
+0.0
+0.1
-0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.3
-0.4
-0.1
N.D.
auxotrophy
YNB Glucose
-0.0
+0.2
+0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.3
-0.4
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.4
+0.0
-0.0
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
+0.5
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
+1.2
+0.3
N.D.
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