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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13348 and 13349 are separated by 223 nucleotides
13349 and 13350 are separated by 455 nucleotides
13350 and 13351 are separated by 206 nucleotides
13351 and 13352 are separated by 173 nucleotides
mRNA_4980: 13348 - K07432 ALG13 beta-1,4-N-acetylglucosaminyltransferase, at 1,469,023 to 1,469,757
13348
mRNA_4981: 13349 - KOG2117 Uncharacterized conserved protein, at 1,469,981 to 1,471,275
13349
mRNA_4982: 13350 - K17879 NUDT7 peroxisomal coenzyme A diphosphatase NUDT7, at 1,471,731 to 1,473,077
13350
mRNA_4983: 13351 - SUPERFAMILY--SSF48371, at 1,473,284 to 1,476,238
13351
mRNA_4984: 13352 - HMMPfam-OsmC-like protein-PF02566,SUPERFAMILY--SSF82784, at 1,476,412 to 1,477,119
13352
Group
Condition
mRNA
_4980
mRNA
_4981
mRNA
_4982
mRNA
_4983
mRNA
_4984
13348
13349
13350
13351
13352
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.3
-1.9
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
-1.8
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
-0.8
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.2
-0.8
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.1
-1.1
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
-0.8
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.1
-1.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.8
-0.4
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
-0.9
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.1
-0.2
-0.5
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.0
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.4
+0.5
-0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.7
-0.4
growth on ypd
YPD
N.D.
N.D.
+0.1
+0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.3
+0.2
+0.3
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