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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13349 and 13350 are separated by 455 nucleotides
13350 and 13351 are separated by 206 nucleotides
13351 and 13352 are separated by 173 nucleotides
13352 and 13353 are separated by 304 nucleotides
mRNA_4981: 13349 - KOG2117 Uncharacterized conserved protein, at 1,469,981 to 1,471,275
13349
mRNA_4982: 13350 - K17879 NUDT7 peroxisomal coenzyme A diphosphatase NUDT7, at 1,471,731 to 1,473,077
13350
mRNA_4983: 13351 - SUPERFAMILY--SSF48371, at 1,473,284 to 1,476,238
13351
mRNA_4984: 13352 - HMMPfam-OsmC-like protein-PF02566,SUPERFAMILY--SSF82784, at 1,476,412 to 1,477,119
13352
mRNA_4985: 13353 - BLAST vps9 domain protein [Zymoseptoria brevis], at 1,477,424 to 1,478,250
13353
Group
Condition
mRNA
_4981
mRNA
_4982
mRNA
_4983
mRNA
_4984
mRNA
_4985
13349
13350
13351
13352
13353
auxotrophy
Dropout Complete
N.D.
-0.1
-0.8
-0.4
-1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-1.9
-0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-1.8
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.8
-0.4
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.2
-0.5
-0.7
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-1.1
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.8
-0.4
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-1.0
-0.1
+0.1
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.1
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.5
-0.6
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-0.8
-0.3
+0.9
auxotrophy
YNB Glucose
N.D.
-0.1
-0.9
+0.0
+0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.2
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.3
-0.0
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.1
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
+0.2
+0.3
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.1
+0.0
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.3
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.7
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.4
-0.3
+0.6
growth on ypd
YPD
N.D.
+0.1
+0.3
+0.2
+1.0
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